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Data analysis
Data analysis add-ons offer a wide range of capabilities, ranging from analytical methods over comprehensive analysis to assay workflows and statistical process control.
Biological Assay Package
Use the Biological Assay Package for potency analysis of biological assays. The add-on comes equipped with a highly flexible test system to qualify your assay. You can perform combination calculations to obtain the reportable value from independent assay runs and use historic assay data to develop equivalence margins.
Use case: Automate a bioassay workflow
For some biological assays, determining relative potency within a single run is not sufficient. In these cases, you perform multiple individual assay runs and then combine the resulting data to obtain a more reliable final potency estimate. The challenge is to combine these individual results efficiently and reproducibly, particularly in regulated environments or when preparing for automated workflows.
Set up the assay template
Performing daily assay runs is a common scenario in Good Manufacturing Practice (GMP) environments. PLA 3.0 supports routine assay analysis by providing assay templates. You use these templates to prepare a standard setup for the assays that PLA 3.0 generates.
Set up the assay elements
Assay elements are the building blocks of your assay. They are the starting point for the setup of your analysis workflow, as they represent the individual samples you want to evaluate in your analysis.

Get started
Get an overview of PLA 3.0, the end-to-end bioassay analysis software. Learn about its ongoing improvements and version updates, and discover the available trial options.
Key concepts
Learn how the key concepts of PLA 3.0 form the structural foundation for your daily work, supporting method development from initial design to routine production.
Data analysis
Data analysis add-ons offer a wide range of capabilities, ranging from analytical methods over comprehensive analysis to assay workflows and statistical process control.
- Biological Assay Package
  Use the Biological Assay Package for potency analysis of biological assays. The add-on comes equipped with a highly flexible test system to qualify your assay. You can perform combination calculations to obtain the reportable value from independent assay runs and use historic assay data to develop equivalence margins.
  - Installation
    Find details on the system requirements for the Biological Assay Package add-on and the steps to install the add-on in your environment.
  - Basic bioassay protocol
    Use Basic bioassay protocol documents to set up a workflow for producing reportable values from multiple independent assay runs. Organize complex methods, retest scenarios, and report several products in a single assay.
  - Combination of assay results
    Use Combination of assay results documents to perform combination calculations for independent assay runs, thus obtaining reportable values for the potency.
  - Equivalence margin development
    Use Equivalence margin development documents to develop and verify test systems based on historic assays and apply these test systems in new development of quantitative response assays.
  - Quantitative response assays
    Use Quantitative response assay documents to calculate the potencies of test samples relative to an established standard. You can also use them to determine absolute potencies based on stock solutions or raw materials.
  - Test system definition
    Use Test system definition documents of the Biological Assay Package to define a collection of suitability tests and corresponding margins for Quantitative response assay documents.
  - Use case: Automate a bioassay workflow
    For some biological assays, determining relative potency within a single run is not sufficient. In these cases, you perform multiple individual assay runs and then combine the resulting data to obtain a more reliable final potency estimate. The challenge is to combine these individual results efficiently and reproducibly, particularly in regulated environments or when preparing for automated workflows.
    - Set up the assay template
      Performing daily assay runs is a common scenario in Good Manufacturing Practice (GMP) environments. PLA 3.0 supports routine assay analysis by providing assay templates. You use these templates to prepare a standard setup for the assays that PLA 3.0 generates.
      - Create the assay template
        Assay templates hold settings such as assay elements, dilution sequence, analysis, and suitability tests.
      - Set up the assay elements
        Assay elements are the building blocks of your assay. They are the starting point for the setup of your analysis workflow, as they represent the individual samples you want to evaluate in your analysis.
      - Set up and assign the preparation schemes
        Preparation schemes correspond to industry-standard practices of dose preparation protocols. They let you efficiently assign dilution sequences and replicate settings to assay elements, ensuring consistency and reducing redundant input during setup.
      - Define the plate size
        Define the plate size for your assay template to establish how many rows and columns the plate uses.
      - Define the analytical settings
        Use regression models to set up regression analysis for your assay elements. Selecting the appropriate regression model is an important step in defining your assay.
      - Create the suitability tests
        Suitability tests are essential for verifying the integrity of both the overall assay and individual samples. They let you prove the validity of your calculation.
      - Define the assay layout
        Define how the samples are arranged on the plate for this use case.
    - Set up the combination template
      Combining assay results is a common task in regulated environments, especially when you need to report results from repeated assay runs. PLA 3.0 supports combination calculations by providing combination templates. You use these templates to prepare the logic according to which PLA 3.0 combines results.
    - Set up the protocol template
      Protocol templates act as reusable workflow definitions. They let you organize recurring analysis tasks, such as evaluating multiple assay runs, applying predefined combination logic, and generating consistent protocol documents. By setting up the protocol template, you create the structure that PLA 3.0 follows when it processes assay data.
    - Perform routine analysis
      Use the protocol template to run the routine analysis for your bioassay workflow. Routine analysis applies the workflow logic you defined earlier and processes the assay data as it becomes available. This step shifts from preparing templates to executing the actual analysis and evaluating the assay results.
  - Reference information
    Find reference information on the document types of the Biological Assay Package add-on.
- bioMérieux Endotoxin Detection Assay Package
  Use the bioMérieux Endotoxin Detection Assay Package add-on to perform endotoxin testing based on recombinant factor C (rFC), a synthetic alternative to naturally sourced reagents derived from horseshoe crabs, as offered by the bioMérieux company.
- Control Chart Package
  The Control Chart Package allows sophisticated statistical process control (for example, by plotting Shewhart I-Charts as recommended in the USP <1010>). It provides visualization options for intervals, subcharts and sidecharts, and allows you to define colors by a secondary characteristic. You can also define rules based on events and time frames.
- Dichotomous Assay Package
  Use the Dichotomous Assay Package to analyze biological assays based on quantal (binary) responses by fitting probit or logit models to estimate the potency of your samples.
- Dose-Response Analysis Package
  The Dose-Response Analysis Package provides various biostatistical methods for immunoassays, ELISA, and more. It supports you in investigating equivalence for calibration curves, provides enhanced data processing, and options for subgroup analysis.
- Microbial Assays for Antibiotics Package
  The Microbial Assays for Antibiotics Package for PLA 3.0 is your software for assessing the potency of antibiotics. This add-on supports various methods, that is, cylinder-plate, turbidimetric, and combination of microbial assays. It enables you to closely follow the guidelines laid out in the United States Pharmacopeia (USP <81>) and the Japanese Pharmacopoeia (JP 4.02).
- Supporting add-ons
  Find details on add-ons that support and supplement data analysis add-ons.
Data import
Use data acquisition and data import add-ons to import external response values and observation data into PLA 3.0 for further processing and evaluation.
User interface
PLA 3.0 supports you in your daily work by providing a set of graphical and textual user interface elements. Learn about the different elements and how to use them efficiently.
Installation and update
Details on deployment, installation, and update of PLA 3.0, and its initial and advanced setup.
Licensing
Details on the licensing solution of PLA 3.0, the available licensing options, and the activation and management of licenses.
Administration
Details on system administration tasks such as setup and maintenance of databases and add-ons, user accounts, access rights, and migration and update procedures.
Regulatory compliance
PLA 3.0 supports you in achieving compliance with regulations such as ISPE GAMP^® 5 and 21 CFR Part 11. It also provides options to validate PLA 3.0 in your environment.
PDF downloads
Download PDF guides of current and previous framework and add-on versions.
Sample lab
Meet the team at Stegmann Labs, where PLA 3.0 plays an essential role in every step of bioassay management.
Glossary
Find definitions of terms.

Set up the assay elements

Assay elements are the building blocks of your assay. They are the starting point for the setup of your analysis workflow, as they represent the individual samples you want to evaluate in your analysis.

Before you begin

You have created the assay template.

About this task

Each assay element plays a specific role in setting up your Quantitative response assay document, serving as a standard, test, or control sample, or a control line. By organizing samples as assay elements, you create a clear structure that supports the entire setup and analysis process.

You can tailor the analysis to reflect the purpose and characteristics of each sample by assigning key settings such as preparation schemes to each assay element. These settings determine how PLA 3.0 processes and evaluates each sample, supporting consistent and reproducible bioassay analysis.

Created from scratch, Quantitative response assay have one standard and one test sample. For this use case, you keep the number of assay elements as is.

Procedure

In the Content editor, expand Setup > Assay elements.

To set up the standard sample:

Expand the Standard sample element.
Rename the sample to Ref.

To set up the test sample:

Expand the Test sample element.
Rename the sample to S1.
Save the template.

What to do next

Set up and assign the preparation schemes.