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Data analysis
Data analysis add-ons offer a wide range of capabilities, ranging from analytical methods over comprehensive analysis to statistical process control. PLA 3.0 also provides a set of add-ons that support and supplement data analysis add-ons.
Microbial Assays for Antibiotics Package
The Microbial Assays for Antibiotics Package for PLA 3.0 is your software for assessing the potency of antibiotics. This add-on supports various methods, that is, cylinder-plate, turbidimetric, and combination of microbial assays. It enables you to closely follow the guidelines laid out in the United States Pharmacopeia (USP <81>) and the Japanese Pharmacopoeia (JP 4.02).
Cylinder plate assays (JP 4.02)
Use Cylinder plate assay (JP 4.02) documents to determine the potency of antibiotics according to the cylinder-plate method described in JP 4.02. PLA 3.0 compares the response values of the test sample at high and low concentration to the response of the standard at high and low concentration.
Set up Cylinder plate assays (JP 4.02)
Find examples on how to set up and work with the Cylinder plate assay (JP 4.02) document type of the Microbial Assays for Antibiotics Package.
Use large plates
New Cylinder plate assay (JP 4.02) documents have 5 plates (Petri dishes) with 4 observations per plate. If you work with large plates, you can adjust both the number of plates and the sets per plate.

Get started
Explore PLA 3.0, its key features and ongoing enhancements. Learn how it fits into your environment, and how to log in and register.
User interface
PLA 3.0 supports you in your daily work by providing a set of graphical and textual user interface elements. Learn about the different elements and how to use them efficiently.
Key concepts
Details on documents and templates, the data editors and the Content editor of PLA 3.0.
Data analysis
Data analysis add-ons offer a wide range of capabilities, ranging from analytical methods over comprehensive analysis to statistical process control. PLA 3.0 also provides a set of add-ons that support and supplement data analysis add-ons.
- Biological Assay Package
  Use the Biological Assay Package for potency analysis of biological assays. The add-on comes equipped with a highly flexible test system to qualify your assay. You can perform combination calculations to obtain a reportable value from independent assay runs and use historic assay data to develop equivalence margins.
- Biological Assays Simulation Package
  Use the Biological Assays Simulation Package to create simulations of quantitative response assays (QRAs) and use the Quantitative response assay document type of PLA 3.0 to store the simulated data.
- bioMérieux Endotoxin Detection Assay Package
  Use the bioMérieux Endotoxin Detection Assay Package add-on to perform endotoxin testing based on recombinant factor C (rFC), a synthetic alternative to naturally sourced reagents derived from horseshoe crabs, as offered by the bioMérieux company.
- Control Chart Package
  The Control Chart Package allows sophisticated statistical process control (for example, by plotting Shewhart I-Charts as recommended in the USP <1010>). It provides visualization options for intervals, subcharts and sidecharts, and allows you to define colors by a secondary characteristic. You can also define rules based on events and time frames.
- Dichotomous Assay Package
  Use the Dichotomous Assay Package to analyze biological assays based on quantal (binary) responses by fitting probit or logit models to estimate the potency of your samples.
- Dose-Response Analysis Package
  The Dose-Response Analysis Package provides various biostatistical methods for immunoassays, ELISA, and more. It supports you in investigating equivalence for calibration curves, provides enhanced data processing, and options for subgroup analysis.
- Generic Document Types Package
  Use the Generic Document Types Package add-on to document general information.
- Integration Report Package
  Use the Integration Report Package for creating reports in additional file formats that are not covered by the standard PLA 3.0 reporting functionality. These reports can be used for example for automated processing in third-party software.
- Measurement Documentation Package
  The Measurement Documentation Package add-on is a universal add-on for documenting different aspects of a measurement. Its documents can be referenced by other document types, for example, Quantitative response assays.
- Microbial Assays for Antibiotics Package
  The Microbial Assays for Antibiotics Package for PLA 3.0 is your software for assessing the potency of antibiotics. This add-on supports various methods, that is, cylinder-plate, turbidimetric, and combination of microbial assays. It enables you to closely follow the guidelines laid out in the United States Pharmacopeia (USP <81>) and the Japanese Pharmacopoeia (JP 4.02).
  - Installation
    Find details on the system requirements for the Microbial Assays for Antibiotics Package add-on and the steps to install the add-on in your environment.
  - Cylinder plate assays (USP <81>)
    Use Cylinder plate assay (USP <81>) documents to determine the potency of antibiotics according to the cylinder-plate method described in USP <81>. PLA 3.0 uses a linear regression model to fit the standard curve. This method allows you to correct for plate-to-plate variation.
  - Cylinder plate assays (JP 4.02)
    Use Cylinder plate assay (JP 4.02) documents to determine the potency of antibiotics according to the cylinder-plate method described in JP 4.02. PLA 3.0 compares the response values of the test sample at high and low concentration to the response of the standard at high and low concentration.
    - Assay setup
      To support you in setting up your assay, Cylinder plate assay (JP 4.02) documents provide a set of concepts you should be familiar with when working with this document type.
    - Assay analysis
      Define the analytical settings of your Cylinder plate assay (JP 4.02) document.
    - Calculation
      Cylinder plate assay (JP 4.02) document calculations closely follow the guidelines laid out in JP 4.02.
    - Test system
      The test system of assay documents lets you set up sophisticated tests to validate the suitability of your assays and plausibility of results. The Microbial Assays for Antibiotics Package provides a range of tests for each document type.
    - Set up Cylinder plate assays (JP 4.02)
      Find examples on how to set up and work with the Cylinder plate assay (JP 4.02) document type of the Microbial Assays for Antibiotics Package.
      - Use large plates
        New Cylinder plate assay (JP 4.02) documents have 5 plates (Petri dishes) with 4 observations per plate. If you work with large plates, you can adjust both the number of plates and the sets per plate.
      - Define a test system
        New assay documents of the Microbial Assays for Antibiotics Package do not contain any statistical tests. Add the assay suitability and sample suitability tests you require.
      - Define combination groups
        Assign samples to combination groups to control which samples PLA 3.0 includes in combination of assays calculations. All valid samples of a combination group are combined in the calculations performed by Combination of microbial assays documents that reference these samples or, to be more precise, that reference the assay documents which contain these samples.
  - Turbidimetric assays (USP <81>/JP 4.02)
    Use Turbidimetric assay (USP <81>/JP 4.02) documents to determine the potency of antibiotics according to the turbidimetric methods described in USP <81> and JP 4.02. PLA 3.0 uses a linear regression model to fit the standard curve.
  - Combination of microbial assays
    Use Combination of microbial assays documents to aggregate data of samples contained in any number of microbial assay documents, apply confidence limits, check for outliers, perform combination of assays calculations, and define statistical tests.
  - Literature
    The methods and procedures provided by the Microbial Assays for Antibiotics Package are based on use cases and requirements from literature.
  - Reference information
    Find reference information on the document types of the Microbial Assays for Antibiotics Package add-on.
- Split Assay Package
  Use the Split Assay Package to split a Quantitative response assay with several Test and Control samples into individual assays, each with the Standard and one Test or Control sample.
- Toolkit for Biological Assay Package
  Use the Toolkit for Biological Assay Package to modify the analytical settings of larger sets of Quantitative response assays or split Quantitative response assays with more than one test or control sample into individual assays.
Data import
Use data acquisition and data import add-ons to import external response values and observation data into PLA 3.0 for further processing and evaluation.
Installation
Details on the deployment and installation of licensed PLA 3.0 versions.
Licensing
Details on the licensing solution of PLA 3.0, the available licensing options, and the activation and management of licenses.
Administration
Details on system administration tasks such as setup and maintenance of databases and add-ons, user accounts, access rights, and migration and update procedures.
Regulatory compliance
PLA 3.0 supports you in achieving compliance with regulations such as ISPE GAMP^® 5 and 21 CFR Part 11. It also provides options to validate PLA 3.0 in your environment.
PDF downloads
Download PDF guides of current and previous framework and add-on versions.
Sample lab
Meet the team of Stegmann Labs Inc. and use our sample laboratory to explore core features and functions of PLA 3.0.
Glossary
Find definitions of terms.

Use large plates

New Cylinder plate assay (JP 4.02) documents have 5 plates (Petri dishes) with 4 observations per plate. If you work with large plates, you can adjust both the number of plates and the sets per plate.

Before you begin

Create a Cylinder plate assay (JP 4.02) document.

About this task

By default, Cylinder plate assay (JP 4.02) documents contain settings intended for assays with 5 plates (Petri dishes) and 4 observations per plate. If you work with large plates, you need to change the following settings to match the setup of your experiment:


Setting	Default value	Note
Sets per plate	1	The default value works for assays that have 1 set of 4 observations (cylinders) per plate (Petri dish).
Number of plates	5	The default value works for assays that have 5 plates (Petri dishes).
Position factors	4 positions 5 plates	The default value of 4 positions works for assays that have 1 set of 4 observations (cylinders) per plate (Petri dish). The default value of 5 plates works for assays that have 5 plates (Petri dishes). Tip: You have to change these settings only if you want to work with the By Position editor.

Procedure

To use large plates:

In the Content editor, go to Setup > Assay design
Select Sets per plate, and enter the number of sets that matches the setup of your experiment.
Select Number of plates, and enter the number of plates that matches the setup of your experiment.
Go to Setup > Observation data.
Go to the position factor for the position (first Column: Position factor element) and expand it.
For the Number of positions element, change the value to match the sets per plate you entered.
Go to the position factor for the plate (second Column: Position factor element) and expand it.
For the Number of positions element, change the value to match the number of plates you entered.
Save the document.